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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These are …

… letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call … applicants from any institution type and at any career stage. Generally, most users are able to work with Berkeley … to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval. …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … made it possible to confidently assign species to nearly 326 genomes. Through the analysis of cliques, it has also … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …

The Metagenome Program uses advanced sequencing technologies to … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that … based on what component they might be interested in like genomics, metabolomics, just basic chemistry, natural …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … phages.  Current Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big …

… info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow …

… streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …

… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: … for functional annotation/curation of your genomes Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) …

… and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …