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Natural Prodcast Episode 10: A Primer on Genome Mining
… getting them out to you all. But for now, here is episode 10 of Natural Prodcast, the primer on genome mining. Hey, … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; … and archaeal genomes that were created – these are Metagenome Associated Genomes, or MAGs. So these are genomes …
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Frequently Asked Questions: Proposal Submission
… letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call … view the proposal templates, go to the proposal submission page , login using your JGI account (create one here if you … applicants from any institution type and at any career stage. Generally, most users are able to work with Berkeley …
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Special Initiatives & Programs
… for BERSS. For DNA synthesis requests, the minimum is 100 kb, and for metabolomics, at least 22 samples are … and synthesis on behalf of the U.S. Department of Energy Bioenergy Research Centers.  The Centers are intended to … refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist must be …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… people what that number is. BETSY PARKINSON: So micromolar, 10 to the negative 6th. Nanomolar, 10 to the negative 9th. … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that … Understanding of Natural Product Induction Betsy's lab webpage and the page on the From Microbes to Medicines outreach …
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Natural Prodcast Episode 18: A CSP Primer
… show notes, which you can always access through JGI’s webpage at  naturalprodcast.com , along with transcripts and … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … funded by DOE-BER and work within the DOE emission space of bioenergy, carbon cycling, biogeochemistry, bioproducts. So …
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DNA Synthesis Program
… the development of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering … by synthesizing genes, pathways, and whole chromosomes for bioenergy and bioproduct applications. The program has … and characterization. In partnership with the Joint BioEnergy Institute (JBEI), we are developing tools …
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Secondary Metabolites Program
… not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often … can unlock new avenues for bio-based products and bioenergy crop enhancement. The program aims to tap into the … … Development of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Fungal & Algal Program
… diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By … of key functional traits that have direct applications in bioenergy production, carbon management, and environmental … biocontrol agents dramatically affect plant health. The  1000 Fungal Genomes Project is a five-year project to …
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Mission
… scientific approaches to these challenges.     Our homepage video includes external footage from:  University of Delaware Laura.Selbmann©PNRA. All … and microbes) relevant to the DOE science mission areas of bioenergy and environmental microbiome processes.  Among the …
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Partnerships: Adopt-A-Genome
… some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes … al.  2023 . Microbiology Resource Announcements. 2023 12 (10), e00548-23 Whole genome sequence of the denitrifying …
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Metabolomics Program
… the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is focused on … in sustainable agriculture, environmental health, and bioenergy development. … EcoFABs:  For studying microbe-host …
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Frequently Asked Questions: Project Management
… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … following sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: …
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