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… The Fungal & Algal Program explores the vast diversity of fungi … to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … The Fungal & Algal Program harnesses cutting-edge sequencing technologies and advanced genomic …

… High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi … of Microbiome . High-throughput stable isotope probing (SIP) proved to vastly reduce labor and improve results. … AMF’s long filaments, or hyphae. This region is called the hyphosphere. By studying its microbial communities, …

… The Fungal & Algal Program Advisory Committee is chartered by …

…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. … An assay used for profiling transcription factor binding sites across entire genomes. This technology has been …

… The Facilities Integrating Collaborations for User Science (FICUS) call represents … and expertise of multiple DOE National User Facilities in one research proposal.  Successful applications will … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly …

… Research Experience (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students … Beyond providing a scalable solution for production of high-quality fungal reference genomes, this program is an important …

… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … that utilize microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and … offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway engineering Mass spectrometry based metabolomics Below is a … IMG/M ), binning 154/217 Metagenome Stable Isotope Probing (SIP) Used for the identification of active groups of …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about … it has a really interesting biosynthetic pathway because fungal genes are cool. And if you like fungal genes, you … In this episode, Dan and Alison discuss the basics of genome …

… fantastic diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial … Plant microbiomes hold the amazing ability to influence plant development, fitness and health. This is a … We are using cutting-edge single-cell profiling methods, including …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been …

… Stable Isotope Probing (SIP) is a powerful technique for studying microbial … those nutrients, and even how quickly. But there's a catch: SIP labwork and analysis can be very demanding.  The JGI …