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… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … catalog of viral, microbial, and microeukaryote genomes and mobile genetic elements, linked to custom … SAGs, MAGs, metagenomes and metatranscriptomes. … GOLD is a web resource for comprehensive access to information …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … culture collections to produce hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm … analysis and genomics data exploration. … The Mycocosm web portal provides data access, visualization, and analysis …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … genes and domains, to identify enzyme coding genes that are signatures for the presence of a specific type of … still a collaboration, indeed, with my group. And Tilmann Weber ’s group, and in particular, Kai Blin and Simon Shaw …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art … Development and maintenance of the Integrated Microbial Genomes (IMG) data management system … As part of this …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … so many bacteria, because it is so easy to sequence their genomes comparatively to especially plants. So yeah, so from … Some reviews of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not … has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven …

… apply to each facility with separate review schedules and selection processes, making it difficult to propose projects …

… catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal lineages to … over 15 million viral genomes and fragments. … GOLD is a web resource for comprehensive access to information …

… is acting very strongly. There is very strong purifying selection, and what matters is a final product. So it … Whereas the nature of the evolutionary force, the selection there is shaping the pathway itself on the … it is more related to what JGI does, which is sequence genomes. And we just published last year in the Nature …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … Portal to eventually replace the Genome Portal. … GOLD is a web resource for comprehensive access to information …