Search

… well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our … through end-to-end automation — and further advancing sequence applications, single cell genomics, DNA synthesis, … [QA/QC]), large-scale liquid handling automation, and sequence analysis. …

… When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… Our research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … Exploring the fascinating world of giant viruses, which challenge our …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Joint Genome … analysis Expose students to peer review process, conveys responsibility and accountability Promote utilization of JGI …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … sample-level reports and tracking statuses.  Please follow the steps outlined below. Click the drop-downs to … sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting …

…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the Integrative … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a …

… preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is …

… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most … The researcher then submits a proposal for consideration in the next review cycle. All proposals … Following DOE approval, project managers negotiate project specifics with PIs (including JGI scientists as needed), and …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

… back to Natural Prodcast. This continues the series of interviews we recorded at the Society for Industrial … enzymes are, right? ALISON NARAYAN: Yes, and so that’s why I don’t like that sentence. I think that sometimes, we … association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, oh …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …