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… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new … The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out to the Group Lead …

… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from … … The IMG/M system serves as a community resource for comparative analysis and annotation of all publicly …

… diversity and metabolic potential, with implications for energy production, environmental sustainability, and … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … for us– what organisms people use for genome mining, why it’s called genome mining, how the biosynthetic gene …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … welcome, Nadine. ALISON TAKEMURA: What is the big picture for you in your lab? NADINE ZIEMERT: Big picture, I want to … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological … significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They apply Lean Six Sigma practices to …

Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … in the analysis and publication of the claimed genome sequences. This opportunity, provided by the Department of … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review …

… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the opportunity to talk to one of … learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …

… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …