Search

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … and do some really complicated carbon skeleton rearrangements, chemistry that we probably don’t [need to] get … machine learning really would help distinguish and predict novel gene clusters. DAN UDWARY: Yeah, it certainly could. …

… our interview this week is with Professor Brian Bachmann from Vanderbilt University’s Chemistry Department, where he … which includes screening methods, genome mining in cave microbiomes, and using engineered biosynthetic pathways and … in order to put them together to build pathways, to make novel compounds, or to find analogs. And that was Warp …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … … A primary purpose of this project is to bring educators from a broad range of disciplines up-to-speed with some of … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We revisited a number of notable … Integrative Genomics Building was painted by Berkeley-based artist Nigel Sussman and dedicated at our 2022 Annual …

The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic … for the JGI’s 25th anniversary and done by Berkeley-based artist Nigel Sussman. It was dedicated at the 2022 JGI Annual Meeting. …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … analyses of algae, while also encouraging community engagement and data exchange. … Phytozome is the JGI's Plant … relationships as well as insights into clade-specific novelties and expansions.  … The SMC provides complete …

Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential to drive innovations in … most pressing challenges. … Exploration of phylogenomic novelty: Advances in metagenomic sequencing, assembly and …

… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic …

The JGI’s Metabolomics Program works to uncover the roles of … genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables … mass spectrometry-based methods to analyze metabolites from a wide range of biological and environmental samples — …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … of the Integrated Microbial Genomes (IMG) data management system … As part of this project, pairwise average … species specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control …

… solutions in energy, agriculture and ecosystem management. … The Microbial Program focuses on using advanced … in particular to study inter-organismal interactions. Novel approaches are being explored to predict microbial … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… with recent computational technology advances in management, processing and visualization of “big data,” and … of the functional dark matter as well as the development of novel methods to enable large-scale comparative analysis, … Acids Res.  45(D1):D457-D465. Paez-Espino, D. et al. (2016) Uncovering Earth’s virome.  Nature   536:425-30 Kyrpides NC. …