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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These are …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within … resource for analysis and annotation of genome and metagenome datasets in a comprehensive comparative context. …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to empower them …

The Metagenome Program uses advanced sequencing technologies to … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and … ecosystem-level impacts of viral infections. The Viral Genomics Group is hosted within the Environmental Genomics …

… streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …

… and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … systems can provide novel insights into the impact of microbial symbionts and their hosts on ecosystems.   …

… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected …

… metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial … based on feasibility and scientific merit.  Arizona Genomics Institute will produce HMW DNA needed for these …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … to advancing the frontiers of environmental and energy genomics. The two-story mural at the Integrative Genomics Building was painted by Berkeley-based artist Nigel …

… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …