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Protocols
… Find protocols provided by JGI and the JGI user community below … DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction Protocols: … RNA Extraction Protocols: … iTag protocols: …
Learn more
Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This … and enabling state-of-the-art sample processing and sequencing capabilities. The Genomic Technologies Group, …
Learn more
Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis … of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will submit raw … have been  discontinued , including smRNA, bisulfite sequencing, and ChIP-seq. …
Learn more
How to Submit Sequencing Samples
… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and … material is one of the greatest predictors of a successful sequencing project. It is imperative that users properly …
Learn more
Partnerships: Myco-Ed
… resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, … into iNaturalist. Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 … 300+ students 800+ iNaturalist observations All MycoEd protocols, course materials and bioinformatics exercises are …
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Sequencing Submission Requirements for DNA Synthesis
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Frequently Asked Questions: Project Management
… manager may then schedule and allocate resources for DNA sequencing. … No. However, the JGI does maintain a list of protocols, found in our HERE (TK) , used successfully by investigators in the past.  These protocols are not endorsed by and have not been validated by …
Learn more
Data Policy
… For sequencing or metabolomics projects: data are subject to a  … Sequencing and Metabolomics projects …
Learn more
Plant Program
… bioeconomy where plants are a major source of chemical production and contribute to a healthier planet and a … germplasm (sequenced mutants and natural accessions) and protocols (transformation, crossing, mutagenesis) are …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … and metabolic potential, with implications for energy production, environmental sustainability, and many other … The Metagenome Program focuses on the high-throughput sequencing of microbial communities to uncover the complex …
Learn more
Industry Engagement Program
… Industry Partners access to our vast set of resources:  JGI sequencing technologies include scaling technologies and … that LanzaTech could use to develop new products with their production strains. To improve the efficiency of strain … JGI users get access to cutting-edge capabilities including sequencing, synthesis and metabolomics. Many users rely on a …
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Publication Policy
… As part of JGI’s production workflows, many staff are involved in processing …
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