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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … ) and the Environmental Molecular Sciences Laboratory ( https://ror.org/04rc0xn13 ), which are DOE …
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Programs & Platform Leads
… and biogeochemistry. In complement to the Community Science Program, JGI researchers drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, … Secondary Metabolites, and DNA Synthesis Science Programs and draw from the infrastructure of Genomic …
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Synthesis
The Joint Genome Institute's DNA Synthesis Platform capabilities support researchers exploring how to … whole chromosomes for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: … data science tools for workflow management and novel automations for DNA design, assembly and analysis Overview …
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Publications
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, comparative …
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Metabolomics
… technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, metabolomics … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse …
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How To Use Our Systems
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … DOE NATIONAL LABORATORIES:  A version of the Bilateral DOE Laboratory Utilization Agreement specifically for the JGI’s …
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Partnerships: Myco-Ed
… (CURE) that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory … Eventually assembly exercises will be made available on the platform through the KBase Educators Community. This group …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in … demystify the complexity of dissolved organic matter (DOM) across a variety of environments. ENVnet allows us to uncover … .   … In support of user science, the JGI Metabolomics Platform delivers rich metabolite profiles from diverse …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, … optimization of cell- and cell free-based expression platforms, tools and data for deciphering regulatory …
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Natural Prodcast Episode 11: Marnix Medema
… the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural products and the science … after I submitted one of those big grants that — fingers crossed, tenure relying on this — antiSMASH version 1 comes … actually also for that we need also new standards and new platforms. So we’ve been recently working together with my …
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