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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … section, include those DOIs in the supplemental materials for your publication. … Proposal DOIs can be found …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … from diverse bacterial and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …

Research in the Woyke laboratory focuses on the utility of … cells that are from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

The IMG group owns and maintains integral components of JGI’s production workflow, … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … on multicore and many core architectures with the ultimate objective of facilitating omics-based scientific …

Research in the Eloe-Fadrosh group focuses on using genome-resolved … Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … to predict or just understand better the language of microbial cell-cell communication. And he told us about his … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …

… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … of microorganisms from Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … expands the bacterial and archaeal orders as seen on the phylogenetic tree, with new lineages of uncultivated genomes …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … of uncultivated microbial lineages. Charting viral ‘dark matter’:   Viruses are abundant in the biosphere and …