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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Phyllosticta citricarpa and sister species of global importance to Citrus
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Publications
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the … large-scale data and professional expertise to support the global research community in studies of complex biological … to advance basic science by sequencing scores of microbial species as well as several model organisms and contributing …
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Viral Genomics Group
Microbes drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong … group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … Commun. 7:10476 Varghese NJ,  et al. (2015) Microbial species delineation using whole genome sequences. Nucleic … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … my little baby daughter, who inherited this room from her sister. And it was supposed to be her room now but, well, it … family would be a set of gene clusters across different species, which all encode the production of either the same …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … Appendix identifies the type of work or specific proposal to be covered under the Agreement. The signing official must … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Single Cell Research Group
Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of … T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … documents below (posted with permission) demonstrate the importance of proper nucleic acid quantification in our …
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