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The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … and activity in natural environments. Integrating metatranscriptomes and metagenomes can, for instance, deepens our understanding of …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … of plasmids automatically identified from genomes, metagenomes, and metatranscriptomes. It provides rich data such as inferred …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …

The IMG group owns and maintains integral components of JGI’s production … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… the user programs at the JGI, and I’m also the head of the microbial genome program. And I’m a scientist here. And have … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … do the bioinformatics and to synthesize these results into publication? So there’s this really important because we …

… … DAN: You’re listening to the US Department of Energy Joint … identified just a small subset of transcripts up-regulated during toxin-inducing conditions. So that was pretty cool. … the end of last year. Dan: So these are going to be seaweed metagenomes? You’re sequencing everything? Brad: Metagenomes …

With collaborative user projects, the JGI’s Plant Program delves into … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …