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… functional genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The … specificity of single cells and genomes extracted from metagenomes, and also as a metric for quality control within …

The Metagenome Program uses advanced sequencing technologies to … The JGI supports microbiome data science by enabling comparative genomics and metagenomics analysis through the … available genomes from three domains of life, in a uniquely integrated context.  … The IMG/VR system serves as a …

… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators and JGI … experience and capabilities in the analysis, annotation, comparative analysis, and interpretation of sequence, …

… “Adopt a Genome” is an informal program for faculty to “claim” the … faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) …

Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way …

To expand access to integrated data, improve tools and infrastructure as well as … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … capability of microbial communities based on their metagenome sequence, in the context of reference isolate … and their associated metadata, around the world. … Integrated Microbial Genomes and Microbiomes … Integrated …

… sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products below. In … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all … available genomes from three domains of life, in a uniquely integrated context. IMG/M provides tools for analyzing the …

… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … …