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… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … Program focuses on the high-throughput sequencing of microbial communities to uncover the complex interactions …

… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … program is to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review … A primary purpose of this project is to bring educators from a broad range of …

… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … to a better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …

… The purpose of this policy is to establish communication norms around … that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … drives sustainable solutions in energy, agriculture and ecosystem management. … microorganisms, by sequencing large populations of bacteria and archaea in their natural environments using …

… rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is … with an active JGI User Agreement older than January 2024 will be required to execute a 2024 version .  The recent updates were approved by the DOE to …

… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … that — fingers crossed, tenure relying on this — antiSMASH version 1 comes out. The reviewers were not kind to my … when it’s, well, when the code is good enough, it can be integrated into the code base. And at the moment, we have …

… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing …

… One of the JGI’s key assets is our user community, comprising a … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … and connect our data to the broader biological data ecosystem. Our community of data-downloading users spans tens …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities …