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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and … Genome Institute ( https://ror.org/04xm1d337 ) and the Environmental Molecular Sciences Laboratory ( …

… of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . … Microbiology , 15032. 10.1038/nmicrobiol.2015.32 … Selected Publications … For further details, please reach out to the …

… soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for … on Phytozome … Phytozome is the JGI's Plant Comparative Genomics portal. Families of related genes representing the … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… constraints exerted by viruses. Research in the viral genomics group aims at improving our collective … and evolutionary parameters driving virus:host dynamics in environmental microbial communities. This involves both … abundant ocean viruses.  Nature . 537:689-93. … Selected Publications … For further information contact the Group …

The Metagenome Program uses advanced sequencing technologies to … potential, with implications for energy production, environmental sustainability, and many other applications. … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

… taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …

To expand access to integrated data, improve tools and infrastructure as well as … seamlessly access and analyze data on scales ranging from single genes and individual genomes to metagenomes to …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … interactions. These insights are crucial for addressing key environmental challenges, such as improving soil health, … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

… helpful to the plants. And so, understanding those broader environmental and ecological roles for secondary metabolites … and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … streams. This will all become clearer as we get into the genomics. So– ALISON TAKEMURA: I’m just enjoying the ride …

… a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential … Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The JGI’s Metabolomics Program works to uncover the roles of small … and ecosystems at the molecular level. Integrating genomics with metabolomics fuels the discovery  of novel … exchange, as well as microbial and plant responses to environmental changes. With advanced mass spectrometry …

JGI Mission As a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental Research program, the Joint Genome Institute … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, …