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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … environmental challenges, such as improving soil health, carbon sequestration and bioeconomy applications. The …
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Partnerships: Adopt-A-Genome
… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This …
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Publications
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … communities contribute to critical processes such as carbon cycling, nutrient cycling, and energy flow. One of …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … with the ultimate objective of facilitating omics-based scientific investigations. Development and maintenance …
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Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics
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New Lineages of Life Group
… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and biogeochemical cycles. Research Team    … A complete publication list available at Google Scholar. Schulz, C … Schulz et al. (2020) Advantages and limits of metagenomic assembly and binning of a giant virus. mSystems. 5 (3) …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …
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Natural Prodcast Episode 7: Ben Shen
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … compounds, Alison. They are – if you can imagine – two carbons in a triple bond attached to two carbons in a double … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … about. He works with methylotrophs, which are a group of carbon-fixing bacteria that I would say are are still fairly … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Plant Program
… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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