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… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as assembly, analysis, annotation, verification, creation of genome …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of … the functional capability of microbial communities based on their metagenome sequence, in the context of …

The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … aligning with the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on … IMG/M system serves as a community resource for comparative analysis and annotation of all publicly available genomes …

The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below is a table of standard product … Resequencing SNP and short indel calls, rearrangement detection, population analysis Text file of SNPs (incl …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided …

When submitting sequences to the JGI DNA Synthesis program, please … are several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …

… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …

… other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … EA, et al. (2016) Metagenomics uncovers gaps in amplicon-based detection of microbial diversity.  Nature Microbiol . … Science 344(6186):909-13 … Research Efforts … Selected Publications … For further details, please reach out to the …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements provide new …

… community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for … this program, the DOE aims to advance genome science-based scientific research from a broad range of disciplines. … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

PIs or co-PIs) who wish to include use-restricted data in publications, or who wish to redistribute data in any way … PI and receive permission for their planned work.   … For sequencing or metabolomics projects: data are subject to a  … and may also be added during the proposal lifecycle based on scientific need. Proposals are considered complete …

… of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes … requirements for samples submitted to the DOE JGI. Plate-based Preparation Guidelines DNA Preparation Guidelines RNA … emails as raw sequence data becomes available, and as analysis is completed. You can view the status of your …