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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to produce manuscripts for publication and the responsibility for leading the efforts … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, …
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Publications
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Special Initiatives & Programs
… and 200 polar/500 nonpolar metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale … are strongly encouraged to contact the JGI to determine general feasibility prior to submitting a BER proposal that … robust high-yielding feedstock plants, using advanced genetic technology to accelerate the domestication of …
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Partnerships: Adopt-A-Genome
… faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. This … while nurturing a fresh cohort of users Reach the next generation of genome scientists and recruit new talent for … the annotation, comparative analysis, and distribution of prokaryotic microbial genome and microbiome datasets. It …
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Prodigal: prokaryotic gene recognition and translation initiation site identification
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Frequently Asked Questions: Project Management
Eukaryotic projects: Kerrie Barry or Vivian Ng Prokaryotic projects: Tijana Glavina del Rio , Danielle … address, click the “Request email change” link. This will generate an email that will go to an administrator to … for individuals associated with your proposal. Find our Publications Policy on our Data Policy & Support page.    … …
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FICUS Overview
… of Science National User Facilities into their research. In recognition of the increasingly collaborative and … provides customized analysis, the JGI also participates in publication of results. … All proposals undergo technical …
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Plant Program
… to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … these species. The pangenomes enable the exploration and identification of small and large structural variation — … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …
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Natural Prodcast Episode 23: Aaron Puri
… and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum … Cummings DA Jr. Methylotroph Quorum Sensing Signal Identification by Inverse Stable Isotopic Labeling . ACS …
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User Support
All work performed at the JGI is initiated via the Work Initiation Process (WIP) interface. To submit a proposal, … Project design with Principal Investigator Providing a general orientation to JGI systems to Investigators … access your data, share with collaborators, and coordinate publication with JGI scientists. Synthetic DNA constructs …
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Secondary Metabolites Program
… conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to … metabolite biosynthesis: We have developed Regulon Identification by in vitro-sequencing (RIViT-seq) to … of transcription factors and determine their binding sites across multiple genomes. Computational prediction of …
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Prokaryote Program User Advisory Committee
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