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… … Dan Udwary: You’re listening to the Department of Energy … common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and … that I was exchanging with people. So I think I wrote 3,000 emails in the course of one and a half year while …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … following the guidelines below.  … If you use data from 3 or fewer JGI proposals, include those DOIs in the auspice …

Interested in reading more JGI intern and mentor success stories? Read more below. …

Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re finding some really, … And I think a lot of times, too, when we even look at publications, it’s always positive data, right? No one ever … kind of comparing it to other repositories out there like MIBiG , for example, those just characterized BGCs that have …

With collaborative user projects, the JGI’s Plant Program delves into … and function. These species are carefully selected by the community to evenly sample the diversity of the plant … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

The Synthetic Biology lab is divided into a DNA synthesis production group and a … DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database … novel enzymatic activities using phylogenomic driven approaches, and understanding the design principles …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of … secondary metabolite compounds. To support users, our efforts include developing computational tools for … and debate about the data. It is also a place where the community can upload new data for use by scientists and the …

The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics … more customized analysis, the JGI also participates in publication of results. See more details on our Review …

… and how we do it here and maybe give an example of a recent publication. ALISON TAKEMURA: Awesome. Yeah, let’s dive in, … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … another data portal out there that’s not JGI’s. It’s called MIBiG , which is the database that has the “minimum …

… … DAN UDWARY: You’re listening to the Department of Energy … metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our little section on … of natural product biosynthesis in bacteria ” The ActDES publication came out after we talked. It looks like a great …

The JGI’s DNA Synthesis Program supports a wide range of projects, from … and biochemically analyzing enzymes to support mission-driven research. Rapid Metabolic Engineering: Metabolic … engineering workflows. … The IMG/M system serves as a community resource for comparative analysis and annotation …