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Natural Prodcast Episode 11: Marnix Medema
… welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In … that I was exchanging with people. So I think I wrote 3,000 emails in the course of one and a half year while …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re finding some really, … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re … happening. And so we should have somewhere around 10, 11, 12 million BGCs in the database on the release, and …
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Partnerships: Adopt-A-Genome
… recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed … and publicly available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ …
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Natural Prodcast Episode 10: A Primer on Genome Mining
Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …
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CSP New Investigator Call
… proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals for this call may be submitted at …
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New Lineages of Life Group
… metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of … through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of metagenomic …
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Natural Prodcast Episode 14: Nigel Mouncey
… that the JGI’s Annual User Meeting is coming up, August 30th through September 1st. Three days of great science, and … never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … a high throughput screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole …
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Natural Prodcast Episode 7: Ben Shen
… company Wyeth that introduced enediynes to the market in 2001 with a drug called Mylotag. Wyeth was later acquired by … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete …
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The unique metabolism of SAR11 aquatic bacteria
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SAR11 bacteria linked to ocean anoxia and nitrogen loss
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Diversity and biogeography of SAR11 bacteria from the Arctic Ocean
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Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
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