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… welcome back to Natural Prodcast, and this will be episode 11. This continues our little sprint on genome mining. In … talk and that now I can bring it to you. So enjoy, episode 11 of Natural Prodcast. Alison Takemura: Marnix, where are … microbiome field, many people had just been looking at like 16S taxonomic profiles of these communities looking at who …

… components. Science, 356 (6333), 82-85 Schulz et al. (2016) A Rickettsiales symbiont of amoebae with ancient … infecting the nucleus of amoebae. The ISME Journal. 8 (8), 1634-1644 … Publications … For further details, please reach out …

… there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re trying to do … happening. And so we should have somewhere around 10, 11, 12 million BGCs in the database on the release, and …

… recruit new talent for biosciences.  Adopt-a-Genome has:  11 CSU educators working with the JGI 120 genomes claimed … Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522 R Robertson, et. al.  … Draft Genome Sequence of  Trichococcus flocculiformis DSM 2094T Isolated from Bulking Sludge in Germany. A. Amin, et. …

… do you check if they’re there? Like we always talk about 16S for bacteria, but we don’t talk about it so easily with … fungi, you look at the ITS region. That’s equivalent to the 16S. However, we did have a talk by Mark Stadler today who … samples, patients, this and that. They’re doing all this 16S and I said, “Why don’t you just include the ITS too? …

… this is Challis et al, Chemistry and Biology, 2000, 211-224, 7:3 And so, you can then make predictions about … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome … reviews of genome mining: Ziemert, Alanjary, and Weber’s 2016 overview of genome mining (open access) The Challis/Corre …

Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … all these very, very related genomes, right – on their 16S level, they’re almost identical! But seeing all these …

… course using modern phylogenetic tools measuring genes, the 16S gene, and comparing it with everything that’s known. So … at that, which allows you to compare the ribosomal gene, 16S gene, to all other bacteria known. And these, all 20, …

… publish the sequence analysis of the target chromosomes 5, 16, and 19, in the journal Nature . Following this …

… never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … looking at emails and I just saw this pop up. And saw a C&E News job little box and I thought, wow, this would be …