Search

… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I … that the JGI’s Annual User Meeting is coming up, August 30th through September 1st. Three days of great science, and … never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick …

So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete … of microbial origin is around 30,000 from fungal, and a 40,000 from bacteria. Okay? And among the 40,000 from …

… in Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed … we’re going to add another 87,000. So that’s, what, a 20%, 30% increase?  Dan insert: It’s a 21.75% increase. ALISON … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …

… available datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and … DSM 14810 (JK 615T) and  Butyrivibrio fibrisolvens DSM 3071 (D1T).  K Berner, et. al.  2024.  Microbiology Resource …

Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re finding some really, … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re trying to do …

DAN: Welcome back to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be … on microbiomes they only talk about the bacteria. My god! 30% of our gut microbes are fungi. It’s really frustrating … you next time!  … Episode Transcript …   … This is episode 4 of Natural Prodcast, our interview with Dr Nancy Keller …

… for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo to maintain the … Data from projects that received samples before Sep 30, 2021 and are ongoing are subject to the 2-year …

Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … all these 120 genomes, and each of them have– I don’t know– 30 gene clusters or so. So I think I spent two years only … NADINE ZIEMERT: It wasn’t that long ago, but maybe 2006, 2007, or something like that. And we actually found the whole …

… through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of … features. Environmental Microbiology. 18 (8), 2326-2342 Schulz and Horn (2015) Intranuclear bacteria: inside the …

… underwater. But thankfully that worked out. And I spent 30, 40 years diving all over the world and bringing samples … Cousteau and Émile Gagnan. And that ultimately– not in the ’40s, but really in the ’50s– led to a little more common use …