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The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

The IMG group owns and maintains integral components of JGI’s production workflow, … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … and ANI values, we were able to ascertain mis-assignment of species names in genomes spanning nearly 18% of all existing …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to … development of complex biomolecules — which can include antimicrobial and anti-pest compounds.  The program is working …

Biology is currently experiencing a revolution brought on by rapid developments in … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … Commun. 7:10476 Varghese NJ,  et al. (2015) Microbial species delineation using whole genome sequences. Nucleic …

… any water that washed down off the hills might carry small pieces of gold along with them and end up in the beds of … of the IMG data portal , which is a larger portal for microbial genomics. IMG stands for Integrated Microbial … from certain kinds of environments or certain kinds of species or whatever. So for example, if you wanted to go …

… critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted by … parameters driving virus:host dynamics in environmental microbial communities. This involves both experimental and …   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s …

Research in the Eloe-Fadrosh group focuses on using genome-resolved … of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . …

… “Adopt a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … with some of the latest developments in microbial genomics, metagenomics, and computational biology, and to …

Research in the Woyke laboratory focuses on the utility of … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated … focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …

Right. Kate Duncan: And Pseudonocardia . And we’ve got new species which we’re currently in the process of almost … each ion, each metabolite, and you’re breaking it into pieces. And then you’re comparing those metabolites based on … And sometimes, in terms of biological activities– like antimicrobial or something– sometimes a little difference is …

Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of entire chromosomes, … The program has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical … … Synthesis Capabilities & Offerings … BOOST … Integrated Microbial Genomes and Microbiomes … Mycocosm … Phytozome … …