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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … viruses with an expanded complement of translation system components.  Science  356: 82-85 Ovchinnikov S. et al. …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, … southern Florida, they encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In …
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How To Use Our Systems
… … Information on Software Looking for information on our software, including BBTools ? Click to find that on …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … also those molecules that mediate a well functioning ecosystem and environment and earth. So yeah, it’s like these … Nature Biotechnology, titled ‘A genomic catalog of Earth’s microbiomes’ . (Citation: Nayfach S et al. A Genomic Catalog …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . … really to learn about JGI, learn about the national lab system, doing some research then. Of course, I never worked … And then getting the tools that we develop into the hands of the broader scientific community.  DAN: Do you want …
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Natural Prodcast Episode 7: Ben Shen
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode … to have an index. You have to have the computer-searching systems. So one of the enabling technologies we wanted to do … of the forest. So the alpha-pinene… Just [think about] your hands: there’s a right hand and the left hand. And I was …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user … in studies of complex biological and environmental systems. We optimize our service to the community through … DOE science mission areas of bioenergy and environmental microbiome processes.  Among the JGI’s largest dedicated …
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Natural Prodcast Episode 6: Marc Chevrette
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and welcome to Episode 6 … MARC: Well, I’m really biased and I like the bugs in the microbiome. So a lot of my work is as focused on insects As … and high school level classrooms to (A) become engaged with STEM and learn about microbiology but also bring their own …
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Natural Prodcast Episode 9: Roger Linington
… nature has to offer us. I found this conversation really inspiring, and I’m super happy to be able bring it to you. … has gone on, the more we’ve become interested in sort of systems level approaches. So rather than asking one question … of evolving trajectory. I think, you know, most scientific careers are like that, in that they they follow an arc. And …
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Natural Prodcast Episode 2: The Primer, Part 2
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re … the sponges or other things. And we know lots more about microbiomes and symbionts that live with other organisms, … ALISON: It sounds like it’s kind of like our endocrine system or hormones in a way too. Like in a maybe analogous …
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Metagenome Program
… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … about you just give us a little bit of your background because you do-- you're classically trained as a synthetic … turn on the natural product, say clusters or expression systems so that-- BETSY PARKINSON: Exactly. DAN: --you get the …
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