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New Lineages of Life Group
… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … Exploring the fascinating world of giant viruses, which challenge our understanding of viral … Leveraging artificial intelligence to extract insights from large-scale biological datasets: Our group develops and …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… may be only 10 times larger. And yet, while they are found everywhere, comparatively little is known about viruses, much less … we are likely to just scratch the surface of what’s out there.  Beyond these 2,000 MAGs extracted from 8,000 … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects that … to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required by …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… episode up is another primer episode. These are episodes where Alison and I talk about a topic or kind of a … back in school from home, not back at school. So, yeah. So there’s been a lot going on. But Natural Prodcast needs to … But mostly, yeah, what we find is that everything is everywhere, which is really kind of a weird surprise. ALISON …
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Natural Prodcast Episode 3: The Primer, Part 3
… science and scientists of secondary metabolism.  DAN: Hey there. This is Dan again, and you’re about to listen to the … you know, we’ve already said secondary metabolism is everywhere. But it turns out secondary metabolism systems … and the third and final part of our Primer conversation, where we’ve introduced concepts in natural products and …
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Viral Genomics Group
… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … in virus:host interaction and host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of … key challenge is to complement diversity surveys ( Who is there? ) with activity measurements ( Who is active …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… in one research proposal.  Submit research proposals  here that integrate genomics with nanoscale science, … the user calls. Please refer to the JGI CMM call available here, which includes the capabilities offered by JGI through … available. If you're requesting DNA synthesis from JGI, there's also a material transfer agreement that’s required. …
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Natural Prodcast Episode 8: Eric Schmidt
… science and scientists of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. … on lots of different creatures. And you can find sponges everywhere in the ocean, and most people think of them as … If you want to read more about the science of RiPPs, there’s no better place to start than with the publication …
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Natural Prodcast Episode 9: Roger Linington
… place in January this year in San Diego, and that city is where I first met Roger, when we were both postdocs at … both sides – on the US side and on the host nation side. So there were many of these, with different groups. Our one was … sophisticated tools, because now we had a very reasonably large set of articles which had been manually curated for …
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Single Cell Research Group
… not be sufficient. A more recent effort in the Woyke lab is therefore focused on the application of  function-driven single-cell genomics . Here, single cells are characterized and selected as based … K. T., Eloe-Fadrosh E. A., Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global …
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Microbiome Data Science Team
… as well as the development of novel methods to enable large-scale comparative analysis, mining and visualization … Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host interactions through global … Nature 578(7795):432-436 Sberro H, et al. (2019) Large-Scale Analyses of Human Microbiomes Reveal Thousands …
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Microbial Program
… bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial research that … associated with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … particularly for uncultivated microorganisms, by sequencing large populations of bacteria and archaea in their natural …
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