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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure … facilities.  … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the JGI has unique … specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems …
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Data Policy
Data produced and released by the US Department of Energy … are subject to the following Data Policy. It is our mission to support open data and information sharing. We also …
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DOE Metrics
FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) Operating Hours Goal Actual Total* Actual % of Goal … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …
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Publication Policy
The JGI has a strong interest in seeing that the data produced by the facility result in scientific … interpretation of sequence, metabolomics, and functional genomics data types as well as in advanced assembly and … elements are  proposal Award DOI(s), JGI’s ROR ID number, DOE contract numbers Please include the appropriate Auspice …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is a …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances …
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Natural Prodcast Episode 18: A CSP Primer
… what are you going to do. So, you probably know that “DOE” is the United States Department of Energy, which is a … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … algal genomes, a lot of effort goes into generating these data sets. There’s a lot of manual work in terms of the …
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Data Policy & Support
… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … to request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  … across at least two of the facilities, and generate datasets beyond what each of these facilities could generate …
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Analyze Data
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Mission
… provides advanced genomic capabilities, large-scale data and professional expertise to support the global … a sustainable bioeconomy. ALL PROPOSALS must support the DOE/BER Mission Areas we serve, see below.  … The U.S. … for Biotechnology . We are located in the Integrative Genomics Building in the heart of the Berkeley Lab campus, …
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JGI Portals
Our data platforms are a key resource for the broader scientific community and require constant developments to meet the ever-changing demands of … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …
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