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The Metagenome Program uses advanced sequencing technologies to … contribute to critical processes such as carbon cycling, nutrient cycling, and energy flow. One of the key goals of … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …

… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … to offer you. So there’s a lot of– we also have a lot of analysis pipelines, be it for, again, metagenome, …

… microbes and microbial communities, global carbon and nutrient cycling, and biogeochemistry — questions of … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s … is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …

The CSP Functional Genomics call is to enable users to perform … accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s …

… and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and plant responses … supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical processes, … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

… drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted … Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host …

… cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript …

… artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of … enhances our understanding of terrestrial biogeochemical cycling and inter-organismal interactions. These insights … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

… that faculty will work with undergraduates in the analysis and publication of the claimed genome sequences. … datasets encompassing >150,000 isolate genomes, 230,000 metagenome-assembled genomes (MAGs), and 40,000+ metagenomes along with curated environmental- and other …

… data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder … FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo to maintain the …