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Natural Prodcast Episode 18: A CSP Primer
… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these programs can … done at the JGI. You’re not necessarily required to acknowledge the individuals at the JGI who worked on your …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic …
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CSP Large Scale Call
The Community Science Program Large Scale Call is focused on genomic science projects that address sustainable biofuel and bioproducts production, leveraging systems-based … is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research … initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … biochemical diversity within secondary metabolites, expanding their potential applications in the bioeconomy … The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to …
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DOE Metrics
… (Trillions) Operating Hours Goal Actual Total* Actual % of Goal Goal (hours)** Actual Total Actual % Goal FY 2025 … target is based on 98% of the total available hours.   FY 2021 DOE Metrics There were 2,180 unique* JGI users in … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – …
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Partnerships: Adopt-A-Genome
… work with undergraduates in the analysis and publication of the claimed genome sequences. This opportunity, provided … to: Build curiosity and illustrate the value of comparative genomic analysis Expose students to peer review process, … and computational biology, and to empower them with the knowledge and skills necessary to extract meaningful …
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Microbial Program
The program provides high-quality, large-scale genomic data to advance microbial research that drives … lineages that are important for bioeconomy applications. By expanding our knowledge of microbial functions and interactions, the …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … bacteria that I would say are are still fairly unexplored in terms of their natural products chemistry, and … by Inverse Stable Isotopic Labeling . ACS Chem Biol. 2021 Aug 20;16(8):1332-1338. doi: 10.1021/acschembio.1c00329. …
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Environmental Genomics Group
… the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic … develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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User Programs
… and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who Should …
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Examples: Successful LOIs & Submissions
See below for examples of successful Letters of Intent to our Community Science … Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User …
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