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… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So … amount that they can request. So the minimum request is 100 kb. The maximum request is 500 kb. DAN UDWARY: For DNA …

The CSP Functional Genomics call is to enable users to perform …

Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 99.8% Q3 2025 175     2,140     Q4 2025 … target is based on 98% of the total available hours.   FY 2021 DOE Metrics There were 2,180 unique* JGI users in … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …

The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …

… is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

… for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will work with … Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though not … has:  11 CSU educators working with the JGI 120 genomes claimed (or about one per student) Seven …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and … e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …

Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … interactions in Antarctic cryptoendolithic communities … CSP Large-Scale LOI #1 … CSP Large-Scale LOI #2 … CSP New …

And the list pretty much goes on. We’re looking at, now, diatoms and golden algae, and, so, really trying to … domoic acid, [and] caused amnesic shelfish poisoning. Over 100 million dollars was lost just in the Dungeness crab … JGI projects over the years starting with, you know, the CSP that we did and then leading up to today to some …

… 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the … Sequencing a Myriad of Type Strains. PLoS Biology  12(8):e1001920 Ivanova N. et al. (2014) Stop Codon Reassignments in …

FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … for which JGI has not yet received samples as of Sep 30, 2021 are subject to a 2-year embargo to maintain the … Data from projects that received samples before Sep 30, 2021 and are ongoing are subject to the 2-year …

… to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING …