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… The Fungal & Algal Program explores the vast diversity of fungi … The Fungal & Algal Program harnesses cutting-edge sequencing … functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant …

… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … humanity. A major focus are biofuel feedstock species and plant-microbe interactions, advancing efforts to create …

… Plants are complex organisms that harbor a fantastic … diversity of cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a … Plant microbiomes hold the amazing ability to influence …

… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data generated … team reported that the algorithm was over 95% successful at classifying the fungal genomes Support Vector Machine …

… The Fungal & Algal Program Advisory Committee is chartered by …

… The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … could be used to treat these highly resistant bacterial and fungal pathogens. And we’ve actually just wrapped up a year, a … and College of Arts and Sciences in Atlanta. She is a plant natural product chemist with a focus on ethnobotany …

… Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager … DNA Synthesis and Single-Cell Genomics Vivian Ng Fungal Genomics …

… to determine coverage of variants depends on project Fungal Minimal Draft Lower coverage short-read whole genome … High quality draft assembly of long-read sequence data, computationally analyzed and improved.  Semi-manual. … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …

… that consists of coordinated hands-on experiments across fungal biology teaching labs. The purpose of the program is … and data analyses compile original data for improving fungal genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect fungi, sterilize tissue, …

… of thousands or more than a million gene clusters, this is computationally too expensive. So the middle road that … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this case they worked on a …

… and ergot alkaloids come from fungi, and Taxol from plants. Plants, fungi, bacteria, archaea, they all have … it when I was teaching is: bacteria might have different lifestyles. There are the kinds of bacteria that, maybe, … of weird growths on livestock due to you know, bacterial or fungal infections. Yeah, okay. So he identified these things …