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… encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … the environment. These advances have led to groundbreaking discoveries in diversity and novel functions identified in …

Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA …

The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …

With collaborative user projects, the JGI’s Plant Program … sources and bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants … evolution. It also utilizes advanced tools, including deep learning algorithms for gene annotation and protein …

… viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … Microbiome. 5 (1), 1-6 Schulz et al. (2017) Giant viruses with an expanded complement of translation system … Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. Scientific …

… program for undergraduate majors interested in developing a deep understanding of STEM teaching & learning. Their coursework focuses on STEM pedagogy, … theory and promoting diversity, equity, and inclusion, with concurrent field work in local classrooms and tutoring …

As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these primer episodes, if you want to dive deeper on all this at http://naturalprodcast.com . And then … put out some software called DeepBGC , which is a machine learning tool that tries to look at patterns of Pfams …

… and exa- scales on multicore and many core architectures with the ultimate objective of facilitating omics-based … (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes … it has also become possible to identify speciation events within existing species. Within the JGI’s production …

… out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … why I’m very excited. I think, among many, many major discoveries since the genomic revolution, to me, as a …

First and foremost, our interview this week is with Professor Brian Bachmann from Vanderbilt University’s … have to do a 10,000-fold dilution to plate that out. The deeper you go in the cave, the less dilution. You can be … Allison Walker at Vanderbilt is coming up with machine learning techniques just to look at clusters and start to …

… this information freely to the public databases. In 2004, the JGI established itself as a national user … Integrative Genomics Building (IGB), a home it shares with the staff of the DOE Systems Biology Knowledgebase … for the behaviors and interactions of complex systems, and accelerating biosystem-design to spur scientific discovery. …

… and we talk about an ongoing project I’ve been working with him on as an exploration into the secondary metabolism … started looking at things and doing chemical structures, learning a little bit about things. And that was the … so about the same time– this was around 1990– we made some discoveries that really looked promising. We found that …