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… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … episode 12 of Natural Prodcast. And it’s our conversation with Nadine Ziemert from the University of Tübingen in … with the AntiSMASH and MIBiG projects. And I found her review in natural product reports on the evolution of genome …

With collaborative user projects, the JGI’s Plant Program … sources and bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants … evolution. It also utilizes advanced tools, including deep learning algorithms for gene annotation and protein …

… encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … the environment. These advances have led to groundbreaking discoveries in diversity and novel functions identified in …

… viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and … Microbiome. 5 (1), 1-6 Schulz et al. (2017) Giant viruses with an expanded complement of translation system … Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. Scientific …

The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology … (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. …

… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … applications will focus on high-risk/high-payoff proposals within the focused topic areas that can be completed on an … LOIs allow the JGI and EMSL to plan for appropriate review and prevent full applications for projects outside of …

Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA …

… out every two weeks. This time, we’ve got a great interview with Ben Shen, from the Scripps Research Institute in … on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … why I’m very excited. I think, among many, many major discoveries since the genomic revolution, to me, as a …

As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these primer episodes, if you want to dive deeper on all this at http://naturalprodcast.com . And then … put out some software called DeepBGC , which is a machine learning tool that tries to look at patterns of Pfams …

… in making this happen. We had a really fun conversation with Roger about all this, in terms of how to build an … It was designed to ensure equitable benefit sharing if any discoveries were made that were of value to the host … for Ray Andersen there, and had a very enjoyable time learning about natural products science. DAN:  Yeah, great. …

… … DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a … of secondary metabolism. Hey everybody, this is Dan with episode 13 of National Prodcast. This continues our … was a great conversation which has really shaped some of my views and language, and I hope you’ll enjoy it too. So here …

… about molecular networking, because I really enjoyed the review that you wrote with Marnix on putting that stuff together. It’s been kind … putting things, coalescing them, so that we can really make discoveries. And so I’m really excited to have read that …