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… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome Institute, where he leads three groups focused on … with a view to developing a deeper understanding of sequence-based gene function. … tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. …

… Newly developed chemiluminescent biosensors shed light on how bacteria function and … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a … These 92 homologues were synthesized as codon optimized sequences and cloned into the Nano-lantern scaffold. Because …

… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples …

… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a … using advanced technologies to reconstruct the complete sequences of individual chromosomes. The team describes the … hypothesizes the difference might not be due to repeated sequences, but rather the more accurate assembly of regions …

… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … Publication: Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of …

… last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s vigilant … last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …

… Interns contributed to a number of projects, from refining lab protocols at the bench to applying artificial … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …

… Machine learning methods were applied on sequenced fungal … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …

… Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and readiness to begin work.  During scientific peer review, …