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Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Insights into convergent evolution of cosexuality in liverworts from the Marchantia quadrata genome
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Targeted genetic manipulation and yeast-like evolutionary genomics in the green alga Auxenochlorella
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Tomas Tyml
… Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with the … by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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Soil virus offers insight into maintaining microorganisms
… data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down chitin. A …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … her institution and Bioenergy Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on … $50 million in annual research and don’t award at least 70 research doctorates a year. Coinciding with the election …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using surprisingly few … corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that maize … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … are accessible on JGI data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing … environmental samples with canonical names.  Since its 1997 launch, active GOLD users have spurred its growth and the …
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