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River microbiomes from around the world: Kelly Wrighton
… Kelly Wrighton and her group at Colorado State University in Fort Collins have a massive undertaking: sequencing the …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from … explained: “One of the hallmarks of JGI is our diverse workforce and our diverse collaborators around the world. That … early stages, so I can begin biological analysis of the data sooner than I anticipated.” In her message, Dumont …
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JGI Announces 2023 Community Science Program Awardees
… to the proposers of the 19 proposals selected for the 2023 Community Science Program call of the U.S. … questions relevant to the DOE mission, and we look forward to facilitating their success. “ The CSP Annual Call … interactions, understanding natural communities important for carbon storage, nutrient cycling, and climate change; …
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A Plantiful Future: Xiaohan Yang
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Better Living Through Bioenergy
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Access to Rock Star Scientists
… have done the groundbreaking work you’ve been reading about for years! And you can ask them about it! And they’re super … and understandings in the field of genomics. This has reinforced my goal to pursue a career in STEM. I have not had … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …
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How Filamentous Fungi Sense Food
… Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of … genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … & Microbiomes database to include a dedicated section for viruses, so researchers around the world would have …
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The Big Deal About Short Plants
… uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one …
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IMG/VR
… Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to characterize following a … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …
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New Research Sheds Light on Diversity in the Deep Sea
… living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are … and chemically-rich ecosystems. This means they hold clues for understanding how life thrives in extreme environments. … and metabolic potential of the communities studied. The datasets are available on the JGI’s  Integrated Microbial …
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