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Computationally Classifying Fungal Lifestyles
… gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a computer … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the … more about their work here in a series of videos produced by JGI Communications & Outreach intern Ashleigh Papp. The …
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Filling in the Plant Tree of Life
… and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project …
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IMG/VR
… of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage novel capabilities of IMG/VR to browse and search through the more than 2 million viral sequences …
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A Powerful Technique to Study Microbes, Now Easier
… process experiments that measure microbial activity in soil. Now, the researchers and robots have made these experiments easier for …
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JGIota: Looking Back at Sequencing for Soybeans
… the soybean, Glycine max. With a full genome sequence, researchers have been able to look into soybean’s strengths – … threatens this important crop. Hear more about that work from researchers Gary Stacey (University of Missouri), Peter van …
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Creating an Energy Market for Miscanthus
Miscanthus will need some upgrades. In this episode, hear from scientists working on understanding Miscanthus biology …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, … on lakewater samples — so this episode is a look at how researchers get these specialized snapshots of a freshwater …
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Microbial Genomics & Metagenomics (MGM) Workshop
… data with existing bioinformatic methods to bridge the gap from sequence to biology. …
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A Shrubbier Version of Rubber
Right now, our natural rubber comes from just one tree species: Hevea brasiliensis . It’s great … latex that becomes rubber, but it’s vulnerable to disease and climate shifts. So researchers are looking into a desert shrub that’s native to …
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JGI announces 2023 CSP Functional Genomics awardees
… proposals for state-of-the-art functional genomics research from potential users who need help translating genomic … gene and genome function.  Below find a list of the six researchers accepted for 2023. Proposals are accepted …
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DOE Metrics
Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS … Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours* Goal Actual Total Actual % of … Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours** Goal Actual Total Actual % of …
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