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Single-cell genomics reveals complex microbial and viral associations in ciliates and testate amoebae
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Draft Genomes of Geographically Distinct Strains and Progeny of the Ectomycorrhizal Basidiomycete Laccaria bicolor.
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Emiley Eloe-Fadrosh
… training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of … Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also leads the … users with questions on how to partner with the Metagenome Science Program on their research are encouraged to …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … team has since identified  Dehalogenimonas etheniformans as one of the strains involved in breaking down PCE at the NRAP … site. However, the microbial strain’s genome sequence was not in IMG/M when the NRAP samples were originally analyzed …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six … Halorubrum lacusprofundi from Deep Lake and Rauer 1 Lake, one of the lakes in the nearby Rauer Islands. Additionally, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… close, using RNA sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … roots. Then, comparing with control seedlings which were not treated with fungi, they used multiple approaches to …
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How Maize Makes An Antibiotic Cocktail
… transferring just four genes encoding these enzymes to another plant, such as  Sorghum bicolor — a  candidate … many different products out, instead of the more typical, one enzyme, one product. At each step, the zealexin pathway … synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … to eight separate groups of viruses. To visualize one particular viral genome in action, they utilized a …
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Understanding Wildfire Recovery, Starting in Soil
… to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … and Coniochaeata lignaria , and both DNA and RNA viruses. One trait that stood out in both bacteria and fungi … This study also sheds light on helpful microbes that had not returned to the forest within this timeframe, namely, …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … the same on an industrial scale to produce biofuels . Since one of the challenges of developing alternative fuels from … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias …
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2024 Progress Report
… Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … Over the last year, the U.S. Department of Energy Joint Genome Institute has continued its journey to realize our … 2023 with over 90% of our two- and five-year milestones  completed . Our new Strategic Plan,  Innovating …
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Fungus Fuels Tree Growth
… with endophytes — a group whose effects on plants are still not well understood — scientists can better fine-tune their … . By contrast, using a different endophytic fungus,  Ilyonectria europaea , had no effect on growth. Liao’s team … partnered with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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