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Expanding Virophage Diversity
… Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … Virus)—for the virophage marker gene MCP, they were able to identify 44,221 total virophage partial sequences, …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel at recycling … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory … isolate it. The JGI provided a range of constructs based on sequences for MAR enzymes from different organisms to …
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Viruses Reprogram Cells into Different Virocells
… changes in marine microbes, the answer is no. They refer to the infected microbial cells as virocells, a change in … them. In the ocean, viruses outnumber surface microbes 10 to 1, and 20% to 40% of the microbes are infected at any … Sullivan’s lab. Their research was enabled in part by the  Facilities Integrating Collaborations for User Science …
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Triggering Morel Fruiting
… Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered … part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the … DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Laboratory, … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes … Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that Nanohaloarchaeota …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander … vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander … Officer). “You define the word ‘collegial’” “Every user facility at this Laboratory needs to have a great operations …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory … Pathways And there is something special about these new lineages recently tied to methanogenesis. Unlike the  …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover … encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US Department of … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory …
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Cataloging the Microbes that Manage the Health of River Systems
… United States. They also provided multiple access points to the information. The team harnessed a community-science … WHONDRS, a community science river sampling program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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JGI on the 2021 Highly Cited Researchers List
… Congratulations to the 2021 Highly Cited Researchers at the JGI! They are … list, and those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor … She also co-organized the NeLLi 2021 Symposium: From New Lineages of Life to New Functions. The seminars focus on …
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