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DAP-seq Drives Robust Mapping of Gene Regulation
… regulation determines when and where genes are activated to sustain life’s processes.  Traditionally, mapping this … interests, this advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. … of where those binding sites are in the genome — those sequences are moving around, disappearing and appearing in …
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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is Society,” hosts sessions in … unless otherwise noted): December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating … Learn About Available Expertise and Resources, Open-Call Opportunities, and Important Tips for Submitting Successful …
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have … that showcase our collaborations and capabilities to enable great science that will help solve energy and … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their …
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CSP Large Scale Call
… projects that address biological functions for biomanufacturing, critical minerals and materials, inter-organismal … biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research (BER) program … any aspect of these mission areas, priority will be given to projects that address the areas of special emphasis that …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a protein … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE …
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Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth
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JGI Earth Month: Wetlands Work in #TenHundredWords
… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant … Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s …
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