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The fungus that made itself at home
… Retracing how the dry rot Serpula lacrymans adapted to a new … habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights on … plant mass for conversion to sustainable, alternative biofuels and bioproducts. This study lends insights on how the …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
… While summer interns at the JGI from multiple programs had their own goals to achieve, they constantly collaborated with each other on new ways of presenting and researching science. …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … Horonobe Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … from the other JGI Portals, as well. “For thousands of scientists around the world, the JGI Genome Portal is a …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system … can also act as a protective layer insulating permafrost from the warming regional temperatures. For this reason, the …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI … head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an environmental … specific metabolic processes. A third approach steps away from reconstructing genomes directly from the environment …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants …
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Back in the Lab: the 2023 Summer Intern Experience
… This summer marked the first fully in-person internship experience in several years for … upended by the pandemic, 2023 gave interns the opportunity to be fully immersed in not only their work, but the opportunity to collaborate with and learn from fellow researchers onsite as well. …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … user facility, report the discovery of a novel archaeum from a hot spring that has the genetic machinery to perform …
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