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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
Learn more
Soil virus offers insight into maintaining microorganisms
… data portal of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … sequences were retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG …
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JGI User Executive Committee Expands
… Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … her institution and Bioenergy Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on … at the University of Delaware. His lab is interested in how microbial communities can efficiently degrade complex …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. … aim to inform the engineering of stable, synthetic microbial communities to take advantage of their joint …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a … are accessible on JGI data portals including the Integrated Microbial Genomes & Microbiomes (IMG/M) system, enhancing …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… for users requiring multiple omics methods to examine microbial chemical production. The Science Soil bacteria in … a blueprint that engineers can use to design more efficient microbial factories. Identifying specific genes, regulatory … Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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Dan Rokhsar
… human chromosomes. After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued … and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics …
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JGI Hosts GPU Hackathon in May
… (OLCF), NVIDIA, and the Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … reusable, and more insightful, for the future of studying microbial communities.   …
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Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes ▿
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Metagenome-assembled genomes reveal unique metabolic adaptations of a basal marine Thaumarchaeota lineage
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