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An Enzyme System to Help Catalyze Bioproduction of Plastic
… reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes … abundant miscellanea of their surroundings. Case in point: for us, the smell of the ocean simply signals we’re near the … isolate it. The JGI provided a range of constructs based on sequences for MAR enzymes from different organisms to …
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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… the 2023 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or … Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and … elements based upon their gene content and their genetic sequences. Roux was first author on a study featuring a new …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… manage the growth, yield and climate resilience of algae — for potential use as biomass or in biomass conversion to … thrives in the Arctic, and how different types of microbes form communities. As temperatures fluctuate, salt levels … annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the …
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JGI Workshop at SIMB NP Meeting
… often tedious and resource intensive. This is often due to, for example, tight regulation of biosynthetic gene clusters … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict … that address these issues. Check the scientific program for relevant posters. …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada … ecology. We also know little about where to collect the California Cone Snail  Californiconus californicus (and cone …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … shotgun metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based …
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MGM Workshop at Fisabio Summer School 2026
… Register here for the workshop The MGM Workshop is Module 4 of the Fisabio … and seminars as well as practical hands-on sessions in bioinformatics and biostatistics. Several sessions will be … by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …
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Katherine Louie
… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research … capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like. …
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JGI at the AGU Fall Meeting
… hosts sessions in New Orleans and online. Register for the meeting here. Here are some sessions of interest … role of user facilities in accelerating research and tips for submitting successful proposals: Collaborate With a U.S. … Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm …
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