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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… and developing RNA barcoding systems to optimize microbial bioreactors. This genomic research creates new … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP … functional capabilities of plants, microbes and microbial communities, and understanding of natural environmental …
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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem
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A toolkit for microbial community editing
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DOE Metrics
… = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … in Q2 is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of …
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Digging into Microbial Ecosystems Deep Underground
… at Colorado State University have many questions about the microbial communities deep underground, and before the pandemic, they …
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A Community Resource for Secondary Metabolite Researchers
… time of publication, it is the largest repository of BGC sequence data from over 1.3 million publicly available … a secondary metabolites portal within the Integrated Microbial Genomes and Microbiomes (IMG/M) system known as … biosynthetic gene clusters and secondary metabolites information from isolate and metagenome data.   The SMC ( …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to … bioenergy crop improvement and terrestrial carbon transformations.” The JGI’s large-scale call included algal genomics … By sequencing the millet rhizosphere and endosphere communities both with and without the shrub’s presence, …
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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First Monoploid Reference Sequence of Sugarcane
… and their complex genomes are more difficult to sequence and assemble, in turn limiting the use of modern, … sets of chromosomes to produce a monoploid reference sequence. For the highly polyploid sugarcane, an … on the gene rich part of the genome by harnessing information from a sequenced related species – sorghum. The …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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Sulfate-Reducing Bacteria That Produce Exopolymers Thrive in the Calcifying Zone of a Hypersaline Cyanobacterial Mat
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High-resolution phylogenetic microbial community profiling
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