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Understanding Wildfire Recovery, Starting in Soil
… carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes within the … which microbes in the soil persist after a wildfire — and why they thrive — gives forest managers more avenues to … builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful snapshot of what soils …
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Evolution of a Fungal Gene Expression Regulator
… in fungi. The Science Changing an A, C, T or G in a genome sequence can lead to changes in protein structures and … the largest analysis of 5mC distribution across the fungal tree of life to date, involving more than 500 species of … 5mC, an important piece of the epigenome. Across the fungal tree of life, they tracked the evolution of 5mC pathways …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… power of plants, and the lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome … all major evolutionary lineages in the land plant tree of life. Ultimately, the resulting comparative … richardii marks the first published manuscript of a genome sequence generated through the OGG. For a long time, C-fern …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, …
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The Case for Conservation
… with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a … comes from finally having an answer to the question, “Why bother keeping this?” For Stuart McDaniel’s lab at the … Pangea. McDaniel’s lab continues to work on the enigma of why the ancient moss sex chromosomes continue to evolve so …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… has helped to define the current shape of the microbial tree of life by filling in genomic information for thousands … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA …
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NeLLi — Symposium on New Lineages of Life
Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of … Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel … cataloged and taxonomically classified to date. Under the “sequence to function’ umbrella, this symposium will further …
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Frederik Schulz
… and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … et al. (2017) Towards a balanced view of the bacterial tree of life. Microbiome. 5 (1), 1-6 Google Scholar … Senior …
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Meeting Code of Conduct
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Picking Up Threads of Cotton Genomics
Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is … it, which exact base or series of bases you have to alter.’ Why should we invest in something that may not be an …
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Micro-Scale Applications Group
… access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the genomes of uncultivated … now uses laser microdissection to selectively isolate and sequence microbial aggregates after first imaging with …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes fungi. The  …
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