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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP controls microbial … bacteria live in complex and varied conditions. A molecule called cyclic di-GMP is a key player in the intracellular … their new biosensor for cyclic di-GMP. The team created functional biosensors by finding an insertion site for the …
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From Competition to Cooperation
… (mycorrhizae), and particularly how fungi that feed on decaying plant matter (saprotrophs) have transitioned to the … these datasets will assist researchers in moving toward functional genomics studies to learn more about the inner workings of … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems …
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Toward More Efficient Artificial Photosynthesis
… was enabled in part through the Community Science Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome … (Berkeley Lab). Supporting the Erb lab through the CSP Functional Genomics call, the JGI synthesized library of genes that …
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A Collaboration to Improve Plant Genome Annotations Across Species
… resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … Atlas and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function …
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Igor Grigoriev
… protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes … of researchers in genome projects and organized numerous genomics workshops. … Russia Postdoctoral training in computational structural genomics, University of California, Berkeley, CA …
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Len Pennacchio
… NLM Board of Regents Working Group on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome … Council, National Human Genome Research Institute, NIH 2019   Lawrence Berkeley Laboratory Director’s Award for … Health” 2013-  Instructor Leena Peltonen School of Human Genomics, Sanger Center 2011-  Co-Organizer “Systems Biology …
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Four Researchers Join JGI User Executive Committee
… Bik is a recipient of the Community Science Program (CSP) New Investigator call. Through membership in the UEC, … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, … community and consider new initiatives in areas such as functional studies (e.g., a functional encyclopedia building …
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JGI on the 2021 Highly Cited Researchers List
… at the JGI.) Igor Grigoriev hosted two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward … a JGI Engagement Webinar on How to Successfully Apply for a CSP Proposal. She also co-organized the NeLLi 2021 …
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A call for caution in the biological interpretation of viral auxiliary metabolic genes
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HaploCharmer: a Snakemake workflow for read-scale haplotype calling adapted to polyploids
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Microbiome Data Collaborative (NMDC) to produce open metagenomics data. Taking the JGI’s call for large-scale … of sequence. “We are thrilled to support this year’s CSP awardees as they embark on ambitious projects that span … efforts including systems-based approaches to unravel functional capabilities of plants, microbes and microbial …
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JGI@25: From Life at the Extremes to Editing Genomes
… led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection … doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. A Functional Mini-Integrase in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: …
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