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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the presence of … species has revealed, for the first time, that this group is unexpectedly powerful: they can whip up dozens of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a Superfund site. The chemical PCE (perchloroethylene) found … to break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers …
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of … Research (BER), a program within the DOE Office of Science. …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is … for collecting genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … This work was supported by the U.S. Department of Energy Office of Science under Contract No. DE-AC02-05CH11231 …
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JGI Portals
… our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a single investment will be reused for further science.  NOTICE The Data Portal application has replaced …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to … into their research. In recognition of the increasingly collaborative and multidisciplinary nature of DOE … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and …
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An Automated Tool for Assessing Virus Data Quality
… assess virus sequence fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed …
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Approved Proposals
… proposals from previous fiscal years for our Community Science Program (CSP) as well as the Facilities Integrating Collaborations for User Science (FICUS) program.  …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… brightest minds in genetics as part of our  2022 Annual Meeting . The meeting was a hybrid event, with guests joining … made possible by CRISPR-Cas9; the Weizmann Institute of Science’s Assaf Vardi, who delved into algae blooms and the … genetic sequences (already known as CRISPR) that came up in her team’s metagenomic  samples . While Banfield …
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Industry Engagement Program
… of user companies. Now the Department of Energy is uniting National Labs and industry, including User Facilities like the JGI, through its Genesis … security and ensure U.S. energy dominance by integrating supercomputers, datasets and AI agents to solve key national …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have … Northwest National Laboratory (PNNL), with additional support from the SLAC National Accelerator Laboratory. After …
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