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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Natural Prodcast Episode 17: Cassandra Quave
Prodcast episode 17. The guest we have this week is Professor Cassandra Quave from Emory University, with joint … early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … I think on COVID that we’re getting ready to submit for publication and have found some interesting hits for that as …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … that might need special technology for DNA sequencing, genomics, metabolomics, and synthetic biology, that maybe … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify …
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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Obtaining Comparative Genomic Data with the VISTA Family of Computational Tools
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Recruiting Human Microbiome Shotgun Data to Site-Specific Reference Genomes
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A k-mer-based approach for phylogenetic classification of taxa in environmental genomic data.
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David Goodstein
… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to … Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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Parallel Evolution of Truncated Transfer RNA Genes in Arachnid Mitochondrial Genomes
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Network Modeling of Complex Data Sets
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MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses
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