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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity … fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a … tools to study this complexity, including single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), …
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A User-Centered Approach to Accessing JGI Data
… Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy considerations do users … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. … metadata criteria. Wilson said that the Data Portal and  Genome Portal will continue to run in parallel for now. …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring … chemical production. The Science Soil bacteria in the genus Streptomyces are nature's chemical factories. They … machinery toward chemical production — a coordinated response that had never been mapped in this detail before.     …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers … nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies … level. Because the annotations are standardized and span the full kingdom, they are well-suited to train machine …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & Berkeley Lab Attendee – $250 Students & Postdocs – … and Applications (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized … opportunity for students and researchers in the viral ecogenomics field to exchange ideas with experts in the field, …
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Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “Thermoanaerobacter cellulolyticus”
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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Draft Genome Sequence of Frankia sp. Strain CN3, an Atypical, Noninfective (Nod–) Ineffective (Fix–) Isolate from Coriaria nepalensis
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Metabolomics Program
… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … genomics with metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables … and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass …
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Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat
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