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Statement on the Use of Genomics Data
… of genomics through open access to resources and promoting data sharing to accelerate discovery and maximize the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 … when these records will be made available again within NCBI systems. In addition, the JGI issued a Request for …
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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, … through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal reflects a … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … a  few years ago, researchers can request quantitative SIP analysis as a capability in proposal calls to the U.S. … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic … Rauer Islands. Additionally, they compared metagenome data generated from samples collected at four Rauer lakes to … The genome and metagenome data are available through JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) platform. …
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein … chitosanase sequences were retrieved using the  JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) data portal. The IMG suite is a community resource for comparative analysis and annotation of all publicly …
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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System
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Biotech Partners
… Biotech Partners provides integrated and high-touch programs that empower …
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the … for data quality and sharing, and data workflows and management best practices that have advanced the microbial …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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